Plot the baseline thresholds — nmr_baseline_threshold

If you have a lot of samples you can make the plot window bigger (or use " ```{r fig.height=10, fig.width=10}" in notebooks), or choose some NMRExperiments.

Usage

nmr_baseline_threshold_plot(
  nmr_dataset,
  thresholds,
  NMRExperiment = "all",
  chemshift_range = c(9.5, 10),
  ...
)

Arguments

nmr_dataset: An nmr_dataset_1D object
thresholds: A named vector. The values are baseline thresholds. The names are NMRExperiments.
NMRExperiment: The NMRExperiments to plot (Use "all" to plot all of them)
chemshift_range: The range to plot, as a first check use the range_without_peaks from nmr_baseline_threshold
...: arguments passed to ggplot2::aes (or to ggplot2::aes_string, being deprecated).

Value

A plot.

Examples


ppm_axis <- seq(from = 0, to = 10, length.out = 1000)
data_1r <- matrix(runif(1000, 0, 10), nrow = 1) + 100
dataset_1D <- new_nmr_dataset_1D(
    ppm_axis = ppm_axis,
    data_1r = data_1r,
    metadata = list(external=data.frame(NMRExperiment = "10"))
)
bl_threshold <- nmr_baseline_threshold(dataset_1D, range_without_peaks = c(9.5,10))
baselineThresh <- nmr_baseline_threshold(dataset_1D)
nmr_baseline_threshold_plot(dataset_1D, bl_threshold)