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Save files to rDoplhin

Source: R/to_rDolphin_blood.R
save_files_to_rDolphin.Rd

The function saves the CSV files required by to_rDolphin and Automatic_targeted_profiling functions for metabolite profiling.

Usage

save_files_to_rDolphin(files_rDolphin, output_directory)

Arguments

files_rDolphin

a list containing 4 elements from files_to_rDolphin

  • meta_rDolphin: metadata in rDolphin format,

  • NMR_spectra: spectra matrix

  • ROI: ROI template

  • Parameters_blood: parameters file

output_directory

a directory in which the CSV files are saved

Value

CSV files containing:

See also

Other import/export functions: Pipelines, files_to_rDolphin(), load_and_save_functions, nmr_data(), nmr_meta_export(), nmr_read_bruker_fid(), nmr_read_samples(), nmr_zip_bruker_samples(), save_profiling_output(), to_ChemoSpec()

Examples

if (FALSE) { # \dontrun{
dataset <- system.file("dataset-demo", package = "AlpsNMR")
excel_file <- system.file("dataset-demo", "dummy_metadata.xlsx", package = "AlpsNMR")
nmr_dataset <- nmr_read_samples_dir(dataset)
files_rDolphin <- files_to_rDolphin_blood(nmr_dataset)
save_files_to_rDolphin(files_rDolphin, output_directory = ".")
} # }