The function saves the CSV files required by to_rDolphin and Automatic_targeted_profiling functions for metabolite profiling.
save_files_to_rDolphin(files_rDolphin, output_directory)
a list containing 4 elements from files_to_rDolphin
meta_rDolphin
: metadata in rDolphin format,
NMR_spectra
: spectra matrix
ROI
: ROI template
Parameters_blood
: parameters file
a directory in which the CSV files are saved
CSV files containing:
Other import/export functions:
Pipelines
,
files_to_rDolphin()
,
load_and_save_functions
,
nmr_data()
,
nmr_meta_export()
,
nmr_read_bruker_fid()
,
nmr_read_samples()
,
nmr_zip_bruker_samples()
,
save_profiling_output()
,
to_ChemoSpec()
if (FALSE) {
dataset <- system.file("dataset-demo", package = "AlpsNMR")
excel_file <- system.file("dataset-demo", "dummy_metadata.xlsx", package = "AlpsNMR")
nmr_dataset <- nmr_read_samples_dir(dataset)
files_rDolphin <- files_to_rDolphin_blood(nmr_dataset)
save_files_to_rDolphin(files_rDolphin, output_directory = ".")
}