GCIMSChromatogram.RdCreate a GCIMSChromatogram object
GCIMSChromatogram(
retention_time,
intensity,
drift_time_idx = NA_integer_,
drift_time_ms = NA_real_,
description = "",
baseline = NULL,
peaks = NULL,
peaks_debug_info = NULL
)A numeric vector with retention times
A numeric vector with the corresponding intensities
The index or indices used to get the intensity
The drift times corresponding to drift_time_idx.
A string with a description (used as plot title, useful e.g. to know the sample it came from)
A numeric vector of the same length as intensity with the corresponding baseline,
or NULL if not set. Use estimateBaseline() to estimate it, baseline() to directly access it.
A data frame with peaks, use findPeaks() to fill it, or peaks() to set/get it
A list with arbitrary debug information from findPeaks()
A GCIMSChromatogram object
GCIMSChromatogram(
retention_time = seq(from = 0, to = 10, length.out = 200),
intensity = 1:200
)
#> An object of class "GCIMSChromatogram"
#> Slot "retention_time":
#> [1] 0.00000000 0.05025126 0.10050251 0.15075377 0.20100503 0.25125628
#> [7] 0.30150754 0.35175879 0.40201005 0.45226131 0.50251256 0.55276382
#> [13] 0.60301508 0.65326633 0.70351759 0.75376884 0.80402010 0.85427136
#> [19] 0.90452261 0.95477387 1.00502513 1.05527638 1.10552764 1.15577889
#> [25] 1.20603015 1.25628141 1.30653266 1.35678392 1.40703518 1.45728643
#> [31] 1.50753769 1.55778894 1.60804020 1.65829146 1.70854271 1.75879397
#> [37] 1.80904523 1.85929648 1.90954774 1.95979899 2.01005025 2.06030151
#> [43] 2.11055276 2.16080402 2.21105528 2.26130653 2.31155779 2.36180905
#> [49] 2.41206030 2.46231156 2.51256281 2.56281407 2.61306533 2.66331658
#> [55] 2.71356784 2.76381910 2.81407035 2.86432161 2.91457286 2.96482412
#> [61] 3.01507538 3.06532663 3.11557789 3.16582915 3.21608040 3.26633166
#> [67] 3.31658291 3.36683417 3.41708543 3.46733668 3.51758794 3.56783920
#> [73] 3.61809045 3.66834171 3.71859296 3.76884422 3.81909548 3.86934673
#> [79] 3.91959799 3.96984925 4.02010050 4.07035176 4.12060302 4.17085427
#> [85] 4.22110553 4.27135678 4.32160804 4.37185930 4.42211055 4.47236181
#> [91] 4.52261307 4.57286432 4.62311558 4.67336683 4.72361809 4.77386935
#> [97] 4.82412060 4.87437186 4.92462312 4.97487437 5.02512563 5.07537688
#> [103] 5.12562814 5.17587940 5.22613065 5.27638191 5.32663317 5.37688442
#> [109] 5.42713568 5.47738693 5.52763819 5.57788945 5.62814070 5.67839196
#> [115] 5.72864322 5.77889447 5.82914573 5.87939698 5.92964824 5.97989950
#> [121] 6.03015075 6.08040201 6.13065327 6.18090452 6.23115578 6.28140704
#> [127] 6.33165829 6.38190955 6.43216080 6.48241206 6.53266332 6.58291457
#> [133] 6.63316583 6.68341709 6.73366834 6.78391960 6.83417085 6.88442211
#> [139] 6.93467337 6.98492462 7.03517588 7.08542714 7.13567839 7.18592965
#> [145] 7.23618090 7.28643216 7.33668342 7.38693467 7.43718593 7.48743719
#> [151] 7.53768844 7.58793970 7.63819095 7.68844221 7.73869347 7.78894472
#> [157] 7.83919598 7.88944724 7.93969849 7.98994975 8.04020101 8.09045226
#> [163] 8.14070352 8.19095477 8.24120603 8.29145729 8.34170854 8.39195980
#> [169] 8.44221106 8.49246231 8.54271357 8.59296482 8.64321608 8.69346734
#> [175] 8.74371859 8.79396985 8.84422111 8.89447236 8.94472362 8.99497487
#> [181] 9.04522613 9.09547739 9.14572864 9.19597990 9.24623116 9.29648241
#> [187] 9.34673367 9.39698492 9.44723618 9.49748744 9.54773869 9.59798995
#> [193] 9.64824121 9.69849246 9.74874372 9.79899497 9.84924623 9.89949749
#> [199] 9.94974874 10.00000000
#>
#> Slot "intensity":
#> [1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
#> [19] 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36
#> [37] 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54
#> [55] 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72
#> [73] 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90
#> [91] 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108
#> [109] 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126
#> [127] 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144
#> [145] 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162
#> [163] 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180
#> [181] 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198
#> [199] 199 200
#>
#> Slot "baseline":
#> NULL
#>
#> Slot "drift_time_idx":
#> [1] NA
#>
#> Slot "drift_time_ms":
#> [1] NA
#>
#> Slot "description":
#> [1] ""
#>
#> Slot "peaks":
#> NULL
#>
#> Slot "peaks_debug_info":
#> NULL
#>